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+# Codes_Karaneh_PPI
+
+## Files description
+
+### data_repository
+
+The dataset repository, data are in the format of an edge list (EL) with or without a weight:
+
+```
+0 1 234
+```
+
+means that node 0 is connected to node 1 with a weight pf 234
+
+Currently contains:
+- *heinetal-rec.txt* dataset described as Heine et al. in Yuen et al. (2019)
+- *human_ppi_lcqb_s900.txt* STRING dataset (version from 2024), with a score of confidence (weight) larger than 900
+
+### python files
+
+- *data_processing.py* codes to read, write, split and sample graph data
+- *evaluation.py* codes to compute evaluation metrics (precision, recall, ...)
+- *pair_scores.py* codes to compute scores (CN, AA, L3, ...) 
+- *workflow.py* main file that manages the call to the others
+
+
+## Add your files
+
+- [ ] [Create](https://docs.gitlab.com/ee/user/project/repository/web_editor.html#create-a-file) or [upload](https://docs.gitlab.com/ee/user/project/repository/web_editor.html#upload-a-file) files
+- [ ] [Add files using the command line](https://docs.gitlab.com/topics/git/add_files/#add-files-to-a-git-repository) or push an existing Git repository with the following command:
+
+```
+cd existing_repo
+git remote add origin https://gitlab.lip6.fr/tabourier/codes_karaneh_ppi.git
+git branch -M main
+git push -uf origin main
+```